TissueInfo API 20130530171129

Packages
edu.cornell.med.icb.allen.xml  
edu.cornell.med.icb.allen.xml.descriptors  
edu.cornell.med.icb.allen.xml.types  
edu.cornell.med.icb.allen.xml.types.descriptors  
edu.cornell.med.icb.stat  
edu.cornell.med.icb.tissueinfo.annotations  
edu.cornell.med.icb.tissueinfo.owl Provides support for exporting the ontologies in the OWL format.
edu.cornell.med.icb.tissueinfo.similarity Tools to calculate tissue expression profile similarity.
edu.cornell.med.icb.tissueinfo.similarity.clustering  
edu.cornell.med.icb.tissueinfo.similarity.preprocessors  
edu.cornell.med.icb.tissueinfo.similarity.scorers  
edu.cornell.med.icb.tools  
edu.mssm.crover.db  
edu.mssm.crover.db.relational Provides configuration and connection pool for a relational database through JDBC.
edu.mssm.crover.imports Provides for the import of sequences from files.
edu.mssm.crover.representation Provides for the representation of biological objects.
edu.mssm.crover.tables Provides for table data structures, algorithms, readers and writers.
edu.mssm.crover.tables.readers Provides table readers.
edu.mssm.crover.tables.treatments Provides table treatments.
edu.mssm.crover.tables.writers Provides table writers.
edu.mssm.crover.tools Provides API to access bioinformatics tools.
edu.mssm.crover.tools.blast Provides an API to access BLAST from Java.
edu.mssm.crover.tools.blast.parsers Provides parsers for the XML version of the BLAST oupput.
edu.mssm.crover.tools.blast.parsers.xml.v3  
edu.mssm.crover.tools.blast.parsers.xml.v3.descriptors  
edu.mssm.crover.tools.tissue TissueInfo command line tools and classes.
edu.mssm.crover.tools.tissue.hierarchy Default hierarchy of tissue developed for TissueInfo.
edu.mssm.crover.tools.tissue.plugins TissueInfo plugins.
edu.mssm.crover.tools.tissue.xml  
edu.mssm.crover.tools.tissue.xml.descriptors  
edu.mssm.crover.util Provides various tools and APIs.
gominer  

 


TissueInfo API 20130530171129

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