edu.mssm.crover.tools.blast
Class BlastContext

java.lang.Object
  edu.mssm.crover.tools.blast.BlastContext

public class BlastContext
extends Object

Constructor Summary

BlastContext()
Constructs a default context for invocation of Blast.

Method Summary

int	getBValue()
int	getDefaultBValue()
double	getDefaultEValue()
int	getDefaultVValue()
double	getEValue()
int	getVValue()
static void	main(String[] args)
void	setBValue(int b_value)
void	setEValue(double e_value)
void	setVValue(int v_value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastContext

public BlastContext()

Constructs a default context for invocation of Blast. The default values are taken from the Blast documentation v 2.0.8.con

Method Detail

getEValue

public double getEValue()

getDefaultEValue

public double getDefaultEValue()

setEValue

public void setEValue(double e_value)

getBValue

public int getBValue()

getDefaultBValue

public int getDefaultBValue()

setBValue

public void setBValue(int b_value)

getVValue

public int getVValue()

getDefaultVValue

public int getDefaultVValue()

setVValue

public void setVValue(int v_value)

main

public static void main(String[] args)