edu.mssm.crover.tables.readers
Class MinesetTableReader

java.lang.Object
  edu.mssm.crover.tables.readers.MinesetTableReader

public class MinesetTableReader
extends Object

Reads SGI's MineSet ASCII table format. The following types are supported : string, float, double, int. Enumerations are not supported at the moment (one could define an enumeration class that represent the value as an int and has a toString() method that returns the symbol associated with each valid value). Options are ignored.

Constructor Summary

MinesetTableReader()

Method Summary

static void	addColumns(Table table, Reader schema) Parse the Mineset schema file to extract the column names and types.
static void	addData(Table table, Reader dataReader)
static void	addData(Table table, Reader data, String stopAt)
String	getDescription()
String	getShortName()
static void	main(String[] args)
protected static void	parseColumnHeader(Table t, String identifier, String line, Class type, int linenumber)
static Table	read(Reader schema, InputStream data)
static Table	read(Reader schema, Reader data)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MinesetTableReader

public MinesetTableReader()

Method Detail

getShortName

public String getShortName()

getDescription

public String getDescription()

read

public static Table read(Reader schema,
                         InputStream data)
                  throws UnsupportedFormatException,
                         SyntaxErrorException

Throws:

UnsupportedFormatException

SyntaxErrorException

read

public static Table read(Reader schema,
                         Reader data)
                  throws UnsupportedFormatException,
                         SyntaxErrorException

Throws:

UnsupportedFormatException

SyntaxErrorException

addColumns

public static void addColumns(Table table,
                              Reader schema)
                       throws IOException,
                              SyntaxErrorException

Parse the Mineset schema file to extract the column names and types. Add these columns to the table. Parses only the content of the input {} block.

Throws:

IOException

SyntaxErrorException

addData

public static void addData(Table table,
                           Reader data,
                           String stopAt)
                    throws SyntaxErrorException,
                           IOException

Throws:

SyntaxErrorException

IOException

parseColumnHeader

protected static void parseColumnHeader(Table t,
                                        String identifier,
                                        String line,
                                        Class type,
                                        int linenumber)
                                 throws SyntaxErrorException

Throws:

SyntaxErrorException

main

public static void main(String[] args)

addData

public static void addData(Table table,
                           Reader dataReader)
                    throws IOException,
                           SyntaxErrorException

Throws:

IOException

SyntaxErrorException