Package edu.mssm.crover.representation

Provides for the representation of biological objects.

See:
Description

Interface Summary

AnnotatedBioSequence
AnnotationSupport
BiologicalAnnotation	Represents a single annotation.
BiologicalAnnotations	Extendable annotation support for AnnotatedBioSequence objects.
BiologicalDescription	This interface is not specified.
BiologicalOrigin	Represents the origin of an information.
BiologicalSequence	Interface to a represent a biological protein sequence.
Description

Class Summary

Annotation	Default implementation of BiologicalAnnotation.
Annotations	Default implementation of BiologicalAnnotations.
Mutation_Annotation	Annotates ponctual mutations.
Origin	Default implementation of BiologicalOrigin.
OriginFactory	Factory to return origins of a specific kind.
Sequence	Default implementation of BiologicalSequence.
SequenceOrigin_Annotation	This annotation describes the origin of the sequence itself.
URL_Annotation

Exception Summary

NoSuchResidue

Package edu.mssm.crover.representation Description

Provides for the representation of biological objects. The word representation refers to a model of information (specified via interfaces) and to a storage component (default implementations for the interfaces).

Package Specification

Related Documentation

For overviews, tutorials, examples, guides, and tool documentation, please see: