TissueInfo API 20130530171129

edu.cornell.med.icb.tissueinfo.similarity.scorers
Interface ExpressionProfileSimilarityScorer

All Known Implementing Classes:
BaselineNormalizedConfidenceScorer, BaselineNormalizerScorer, BinaryConfidenceScorer, BinaryScorer, EstRepresentationScorer, ExpressionConfidenceScorer, FastExpressionConfidenceScorer, KendallTauScorer, MaxNormalizedConfidenceScorer, MaxNormalizerScorer, NormalizedBinaryScorer, NormalizedConfidenceScorer, NormalizerScorer, PearsonScorer, RawEstCountScorer, ShuffleNormalizedBinaryScorer, ShuffleNormalizedConfidenceScorer, ShuffleNormalizerScorer

public interface ExpressionProfileSimilarityScorer

Implementations of this interface can be used to score the similarity of two expression profiles. The scorer must produce a score that is more positive when the two profiles compared are more similar.

Author:
Fabien Campagne Date: Apr 12, 2007 Time: 6:47:00 PM

Method Summary
 double score(int[] queryCounts, int[] targetCounts, int[] globalTissueRepresentationCounts)
           
 double score(int[] queryCounts, int[] targetCounts, int[] globalTissueRepresentationCounts, float[] tissueWeights)
           
 

Method Detail

score

double score(int[] queryCounts,
             int[] targetCounts,
             int[] globalTissueRepresentationCounts)

score

double score(int[] queryCounts,
             int[] targetCounts,
             int[] globalTissueRepresentationCounts,
             float[] tissueWeights)

TissueInfo API 20130530171129

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