edu.cornell.med.icb.tissueinfo.similarity.scorers
Class BaselineNormalizerScorer

java.lang.Object
  edu.cornell.med.icb.tissueinfo.similarity.scorers.BaselineNormalizerScorer

All Implemented Interfaces:

ExpressionProfileSimilarityScorer

public class BaselineNormalizerScorer
extends Object
implements ExpressionProfileSimilarityScorer

A scorer that normalizes the score produced by another scorer given the sums of EST counts in the query and target.

Author:

Fabien Campagne Date: Jan 7, 2008

Constructor Summary

BaselineNormalizerScorer(ExpressionProfileSimilarityScorer delegateScorer)

Method Summary

double	score(int[] queryCounts, int[] targetCounts, int[] globalTissueRepresentationCounts)
double	score(int[] queryCounts, int[] targetCounts, int[] globalTissueRepresentationCounts, float[] tissueWeights)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BaselineNormalizerScorer

public BaselineNormalizerScorer(ExpressionProfileSimilarityScorer delegateScorer)

Method Detail

score

public double score(int[] queryCounts,
                    int[] targetCounts,
                    int[] globalTissueRepresentationCounts)

Specified by:

score in interface ExpressionProfileSimilarityScorer

score

public double score(int[] queryCounts,
                    int[] targetCounts,
                    int[] globalTissueRepresentationCounts,
                    float[] tissueWeights)

Specified by:

score in interface ExpressionProfileSimilarityScorer