edu.cornell.med.icb.tissueinfo.annotations
Class AnnotationParser

java.lang.Object
  edu.cornell.med.icb.tissueinfo.annotations.AnnotationParser

public class AnnotationParser
extends Object

Author:

Fabien Campagne Date: Sep 4, 2007 Time: 5:29:56 PM

Constructor Summary

AnnotationParser()

Method Summary

AnnotationSet

parse(Reader reader) Parse an extended TissueInfo annotation file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationParser

public AnnotationParser()

Method Detail

parse

public AnnotationSet parse(Reader reader)

Parse an extended TissueInfo annotation file. Format of this file is as follows:

 sampleId1 [ \t]+ type1:+value1[,+value2][,...]; [type2:+value3[+value4]]
 sampleId2 [ \t]+ type1:+value5[,+value6][,...]; [type2:+value7[+value8]]
 

Parameters:

reader -