|
Class Summary |
| Absorption |
Class Absorption. |
| AbsorptionDescriptor |
Class AbsorptionDescriptor. |
| AuthorList |
The authors of the citation. |
| AuthorListDescriptor |
Class AuthorListDescriptor. |
| Begin |
Class Begin. |
| BeginDescriptor |
Class BeginDescriptor. |
| BpcCommentGroup |
Class BpcCommentGroup. |
| BpcCommentGroupDescriptor |
Class BpcCommentGroupDescriptor. |
| Citation |
Class Citation. |
| CitationDescriptor |
Class CitationDescriptor. |
| CitationType |
The citation type stores all information about a citation. |
| CitationTypeDescriptor |
Class CitationTypeDescriptor. |
| CitingCitation |
Used by type: unpublished results. |
| CitingCitationDescriptor |
Class CitingCitationDescriptor. |
| Comment |
Class Comment. |
| CommentDescriptor |
Class CommentDescriptor. |
| CommentType |
The comment element stores all information found in the CC lines
of the flatfile format. |
| CommentTypeChoice |
Class CommentTypeChoice. |
| CommentTypeChoiceDescriptor |
Class CommentTypeChoiceDescriptor. |
| CommentTypeChoiceSequence |
Class CommentTypeChoiceSequence. |
| CommentTypeChoiceSequence2 |
Class CommentTypeChoiceSequence2. |
| CommentTypeChoiceSequence2Descriptor |
Class CommentTypeChoiceSequence2Descriptor. |
| CommentTypeChoiceSequence3 |
Class CommentTypeChoiceSequence3. |
| CommentTypeChoiceSequence3Descriptor |
Class CommentTypeChoiceSequence3Descriptor. |
| CommentTypeChoiceSequence4 |
Class CommentTypeChoiceSequence4. |
| CommentTypeChoiceSequence4Descriptor |
Class CommentTypeChoiceSequence4Descriptor. |
| CommentTypeChoiceSequenceDescriptor |
Class CommentTypeChoiceSequenceDescriptor. |
| CommentTypeDescriptor |
Class CommentTypeDescriptor. |
| Component |
The component list is equivalent to the CONTAINS section of the
DE line. |
| ComponentDescriptor |
Class ComponentDescriptor. |
| Consortium |
Class Consortium. |
| ConsortiumDescriptor |
Class ConsortiumDescriptor. |
| ConsortiumType |
Class ConsortiumType. |
| ConsortiumTypeDescriptor |
Class ConsortiumTypeDescriptor. |
| DbReference |
Class DbReference. |
| DbReferenceDescriptor |
Class DbReferenceDescriptor. |
| DbReferenceType |
Database cross-references, equivalent to the flatfile format's
DR line. |
| DbReferenceTypeDescriptor |
Class DbReferenceTypeDescriptor. |
| Domain |
The domain list is equivalent to the INCLUDES section of the DE
line. |
| DomainDescriptor |
Class DomainDescriptor. |
| EditorList |
The editors of a book. |
| EditorListDescriptor |
Class EditorListDescriptor. |
| End |
Class End. |
| EndDescriptor |
Class EndDescriptor. |
| Entry |
Class Entry. |
| EntryDescriptor |
Class EntryDescriptor. |
| EntryType |
A (public) SPTr entry |
| EntryTypeDescriptor |
Class EntryTypeDescriptor. |
| Event |
Class Event. |
| EventDescriptor |
Class EventDescriptor. |
| EventType |
This element stores information about events that cause an
alternative product. |
| EventTypeDescriptor |
Class EventTypeDescriptor. |
| Evidence |
Class Evidence. |
| EvidenceDescriptor |
Class EvidenceDescriptor. |
| EvidenceType |
The evidence element is equivalent to the actual evidence (EV
line). |
| EvidenceTypeDescriptor |
Class EvidenceTypeDescriptor. |
| Feature |
Class Feature. |
| FeatureDescriptor |
Class FeatureDescriptor. |
| FeatureType |
Currently there is only one basic feature type, but this will
change in future with enhancement of the FT line parsers. |
| FeatureTypeDescriptor |
Class FeatureTypeDescriptor. |
| Gene |
Class Gene. |
| GeneDescriptor |
Class GeneDescriptor. |
| GeneLocation |
Class GeneLocation. |
| GeneLocationDescriptor |
Class GeneLocationDescriptor. |
| GeneLocationType |
Defines the locations/origins of the shown sequence (OG line). |
| GeneLocationTypeDescriptor |
Class GeneLocationTypeDescriptor. |
| GeneNameType |
The gene name type is used for gene information. |
| GeneNameTypeDescriptor |
Class GeneNameTypeDescriptor. |
| Interactant |
Class Interactant. |
| InteractantDescriptor |
Class InteractantDescriptor. |
| InteractantGroup |
Class InteractantGroup. |
| InteractantGroupDescriptor |
Class InteractantGroupDescriptor. |
| InteractantType |
Class InteractantType. |
| InteractantTypeDescriptor |
Class InteractantTypeDescriptor. |
| Isequence |
Class Isequence. |
| IsequenceDescriptor |
Class IsequenceDescriptor. |
| Isoform |
Class Isoform. |
| IsoformDescriptor |
Class IsoformDescriptor. |
| IsoformType |
Contains all information on a certain isoform including
references to possible features defining the sequence. |
| IsoformTypeDescriptor |
Class IsoformTypeDescriptor. |
| Keyword |
Class Keyword. |
| KeywordDescriptor |
Class KeywordDescriptor. |
| Kinetics |
Class Kinetics. |
| KineticsDescriptor |
Class KineticsDescriptor. |
| Lineage |
Class Lineage. |
| LineageDescriptor |
Class LineageDescriptor. |
| Link |
This stored the URIs defined in the WWW and FTP tokens of the
database (online information in the XML format) CC comment type. |
| LinkDescriptor |
Class LinkDescriptor. |
| Location |
Class Location. |
| LocationDescriptor |
Class LocationDescriptor. |
| LocationType |
A location can be either a position or have a start and end,
only start,
only end or is an empty element if the position is unknown. |
| LocationTypeDescriptor |
Class LocationTypeDescriptor. |
| LocationTypeSequence |
Class LocationTypeSequence. |
| LocationTypeSequenceDescriptor |
Class LocationTypeSequenceDescriptor. |
| Name |
Class Name. |
| NameDescriptor |
Class NameDescriptor. |
| NameListType |
Class NameListType. |
| NameListTypeDescriptor |
Class NameListTypeDescriptor. |
| NameListTypeItem |
Class NameListTypeItem. |
| NameListTypeItemDescriptor |
Class NameListTypeItemDescriptor. |
| NameType |
The name type is used for protein names occuring in an entry,
which are represented in a flat file as DE lines. |
| NameTypeDescriptor |
Class NameTypeDescriptor. |
| Note |
Class Note. |
| NoteDescriptor |
Class NoteDescriptor. |
| Organism |
Class Organism. |
| OrganismDescriptor |
Class OrganismDescriptor. |
| OrganismNameType |
The name type is used for source organism names. |
| OrganismNameTypeDescriptor |
Class OrganismNameTypeDescriptor. |
| Person |
Class Person. |
| PersonDescriptor |
Class PersonDescriptor. |
| PersonType |
Class PersonType. |
| PersonTypeDescriptor |
Class PersonTypeDescriptor. |
| Plasmid |
Class Plasmid. |
| PlasmidDescriptor |
Class PlasmidDescriptor. |
| Position |
Class Position. |
| PositionDescriptor |
Class PositionDescriptor. |
| PositionType |
Class PositionType. |
| PositionTypeDescriptor |
Class PositionTypeDescriptor. |
| Property |
Class Property. |
| PropertyDescriptor |
Class PropertyDescriptor. |
| PropertyType |
Class PropertyType. |
| PropertyTypeDescriptor |
Class PropertyTypeDescriptor. |
| Protein |
Class Protein. |
| ProteinDescriptor |
Class ProteinDescriptor. |
| ProteinType |
The protein element stores all the information found in the DE
line of a flatfile entry. |
| ProteinTypeDescriptor |
Class ProteinTypeDescriptor. |
| Reference |
Class Reference. |
| ReferenceDescriptor |
Class ReferenceDescriptor. |
| ReferenceType |
Stores all information of the reference block in SPTr (RN, RP,
RC, RX, RA, RT and RL line). |
| ReferenceTypeDescriptor |
Class ReferenceTypeDescriptor. |
| Sequence |
Class Sequence. |
| SequenceDescriptor |
Class SequenceDescriptor. |
| Source |
Contains all information about the source this citation is
referring to (RC line). |
| SourceDataType |
Contains all information about the source this citation is
referring to (RC line). |
| SourceDataTypeDescriptor |
Class SourceDataTypeDescriptor. |
| SourceDataTypeItem |
Class SourceDataTypeItem. |
| SourceDataTypeItemDescriptor |
Class SourceDataTypeItemDescriptor. |
| SourceDescriptor |
Class SourceDescriptor. |
| Species |
Class Species. |
| SpeciesDescriptor |
Class SpeciesDescriptor. |
| SptrCitationGroup |
Groups the scope (RP lines) and source data (RC lines) lists. |
| SptrCitationGroupDescriptor |
Class SptrCitationGroupDescriptor. |
| StatusType |
The status attribute provides a known/unknown flag. |
| StatusTypeDescriptor |
Class StatusTypeDescriptor. |
| Strain |
Class Strain. |
| StrainDescriptor |
Class StrainDescriptor. |
| Tissue |
Class Tissue. |
| TissueDescriptor |
Class TissueDescriptor. |
| Transposon |
Class Transposon. |
| TransposonDescriptor |
Class TransposonDescriptor. |
| Uniprot |
Contains a collection of SPTr entries. |
| UniprotDescriptor |
Class UniprotDescriptor. |