Textractor API textractor-738 (20110316124242)

Package textractor.xml.uniprot.xml

Class Summary
Absorption Class Absorption.
AbsorptionDescriptor Class AbsorptionDescriptor.
AuthorList The authors of the citation.
AuthorListDescriptor Class AuthorListDescriptor.
Begin Class Begin.
BeginDescriptor Class BeginDescriptor.
BpcCommentGroup Class BpcCommentGroup.
BpcCommentGroupDescriptor Class BpcCommentGroupDescriptor.
Citation Class Citation.
CitationDescriptor Class CitationDescriptor.
CitationType The citation type stores all information about a citation.
CitationTypeDescriptor Class CitationTypeDescriptor.
CitingCitation Used by type: unpublished results.
CitingCitationDescriptor Class CitingCitationDescriptor.
Comment Class Comment.
CommentDescriptor Class CommentDescriptor.
CommentType The comment element stores all information found in the CC lines of the flatfile format.
CommentTypeChoice Class CommentTypeChoice.
CommentTypeChoiceDescriptor Class CommentTypeChoiceDescriptor.
CommentTypeChoiceSequence Class CommentTypeChoiceSequence.
CommentTypeChoiceSequence2 Class CommentTypeChoiceSequence2.
CommentTypeChoiceSequence2Descriptor Class CommentTypeChoiceSequence2Descriptor.
CommentTypeChoiceSequence3 Class CommentTypeChoiceSequence3.
CommentTypeChoiceSequence3Descriptor Class CommentTypeChoiceSequence3Descriptor.
CommentTypeChoiceSequence4 Class CommentTypeChoiceSequence4.
CommentTypeChoiceSequence4Descriptor Class CommentTypeChoiceSequence4Descriptor.
CommentTypeChoiceSequenceDescriptor Class CommentTypeChoiceSequenceDescriptor.
CommentTypeDescriptor Class CommentTypeDescriptor.
Component The component list is equivalent to the CONTAINS section of the DE line.
ComponentDescriptor Class ComponentDescriptor.
Consortium Class Consortium.
ConsortiumDescriptor Class ConsortiumDescriptor.
ConsortiumType Class ConsortiumType.
ConsortiumTypeDescriptor Class ConsortiumTypeDescriptor.
DbReference Class DbReference.
DbReferenceDescriptor Class DbReferenceDescriptor.
DbReferenceType Database cross-references, equivalent to the flatfile format's DR line.
DbReferenceTypeDescriptor Class DbReferenceTypeDescriptor.
Domain The domain list is equivalent to the INCLUDES section of the DE line.
DomainDescriptor Class DomainDescriptor.
EditorList The editors of a book.
EditorListDescriptor Class EditorListDescriptor.
End Class End.
EndDescriptor Class EndDescriptor.
Entry Class Entry.
EntryDescriptor Class EntryDescriptor.
EntryType A (public) SPTr entry
EntryTypeDescriptor Class EntryTypeDescriptor.
Event Class Event.
EventDescriptor Class EventDescriptor.
EventType This element stores information about events that cause an alternative product.
EventTypeDescriptor Class EventTypeDescriptor.
Evidence Class Evidence.
EvidenceDescriptor Class EvidenceDescriptor.
EvidenceType The evidence element is equivalent to the actual evidence (EV line).
EvidenceTypeDescriptor Class EvidenceTypeDescriptor.
Feature Class Feature.
FeatureDescriptor Class FeatureDescriptor.
FeatureType Currently there is only one basic feature type, but this will change in future with enhancement of the FT line parsers.
FeatureTypeDescriptor Class FeatureTypeDescriptor.
Gene Class Gene.
GeneDescriptor Class GeneDescriptor.
GeneLocation Class GeneLocation.
GeneLocationDescriptor Class GeneLocationDescriptor.
GeneLocationType Defines the locations/origins of the shown sequence (OG line).
GeneLocationTypeDescriptor Class GeneLocationTypeDescriptor.
GeneNameType The gene name type is used for gene information.
GeneNameTypeDescriptor Class GeneNameTypeDescriptor.
Interactant Class Interactant.
InteractantDescriptor Class InteractantDescriptor.
InteractantGroup Class InteractantGroup.
InteractantGroupDescriptor Class InteractantGroupDescriptor.
InteractantType Class InteractantType.
InteractantTypeDescriptor Class InteractantTypeDescriptor.
Isequence Class Isequence.
IsequenceDescriptor Class IsequenceDescriptor.
Isoform Class Isoform.
IsoformDescriptor Class IsoformDescriptor.
IsoformType Contains all information on a certain isoform including references to possible features defining the sequence.
IsoformTypeDescriptor Class IsoformTypeDescriptor.
Keyword Class Keyword.
KeywordDescriptor Class KeywordDescriptor.
Kinetics Class Kinetics.
KineticsDescriptor Class KineticsDescriptor.
Lineage Class Lineage.
LineageDescriptor Class LineageDescriptor.
Link This stored the URIs defined in the WWW and FTP tokens of the database (online information in the XML format) CC comment type.
LinkDescriptor Class LinkDescriptor.
Location Class Location.
LocationDescriptor Class LocationDescriptor.
LocationType A location can be either a position or have a start and end, only start, only end or is an empty element if the position is unknown.
LocationTypeDescriptor Class LocationTypeDescriptor.
LocationTypeSequence Class LocationTypeSequence.
LocationTypeSequenceDescriptor Class LocationTypeSequenceDescriptor.
Name Class Name.
NameDescriptor Class NameDescriptor.
NameListType Class NameListType.
NameListTypeDescriptor Class NameListTypeDescriptor.
NameListTypeItem Class NameListTypeItem.
NameListTypeItemDescriptor Class NameListTypeItemDescriptor.
NameType The name type is used for protein names occuring in an entry, which are represented in a flat file as DE lines.
NameTypeDescriptor Class NameTypeDescriptor.
Note Class Note.
NoteDescriptor Class NoteDescriptor.
Organism Class Organism.
OrganismDescriptor Class OrganismDescriptor.
OrganismNameType The name type is used for source organism names.
OrganismNameTypeDescriptor Class OrganismNameTypeDescriptor.
Person Class Person.
PersonDescriptor Class PersonDescriptor.
PersonType Class PersonType.
PersonTypeDescriptor Class PersonTypeDescriptor.
Plasmid Class Plasmid.
PlasmidDescriptor Class PlasmidDescriptor.
Position Class Position.
PositionDescriptor Class PositionDescriptor.
PositionType Class PositionType.
PositionTypeDescriptor Class PositionTypeDescriptor.
Property Class Property.
PropertyDescriptor Class PropertyDescriptor.
PropertyType Class PropertyType.
PropertyTypeDescriptor Class PropertyTypeDescriptor.
Protein Class Protein.
ProteinDescriptor Class ProteinDescriptor.
ProteinType The protein element stores all the information found in the DE line of a flatfile entry.
ProteinTypeDescriptor Class ProteinTypeDescriptor.
Reference Class Reference.
ReferenceDescriptor Class ReferenceDescriptor.
ReferenceType Stores all information of the reference block in SPTr (RN, RP, RC, RX, RA, RT and RL line).
ReferenceTypeDescriptor Class ReferenceTypeDescriptor.
Sequence Class Sequence.
SequenceDescriptor Class SequenceDescriptor.
Source Contains all information about the source this citation is referring to (RC line).
SourceDataType Contains all information about the source this citation is referring to (RC line).
SourceDataTypeDescriptor Class SourceDataTypeDescriptor.
SourceDataTypeItem Class SourceDataTypeItem.
SourceDataTypeItemDescriptor Class SourceDataTypeItemDescriptor.
SourceDescriptor Class SourceDescriptor.
Species Class Species.
SpeciesDescriptor Class SpeciesDescriptor.
SptrCitationGroup Groups the scope (RP lines) and source data (RC lines) lists.
SptrCitationGroupDescriptor Class SptrCitationGroupDescriptor.
StatusType The status attribute provides a known/unknown flag.
StatusTypeDescriptor Class StatusTypeDescriptor.
Strain Class Strain.
StrainDescriptor Class StrainDescriptor.
Tissue Class Tissue.
TissueDescriptor Class TissueDescriptor.
Transposon Class Transposon.
TransposonDescriptor Class TransposonDescriptor.
Uniprot Contains a collection of SPTr entries.
UniprotDescriptor Class UniprotDescriptor.
 


Textractor API textractor-738 (20110316124242)

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