textractor.datamodel.annotation
Class SingleTermAnnotation

java.lang.Object
  textractor.datamodel.annotation.TextFragmentAnnotation
      textractor.datamodel.annotation.SingleTermAnnotation

All Implemented Interfaces:

AnnotationSource

public final class SingleTermAnnotation
extends TextFragmentAnnotation

Stores single annotation about a text fragment. Annotation is produced by humans and entered into the database. This class supports this _process. example: --- 1 --- A:protein < enter ... Created by IntelliJ IDEA. User: lshi Date: Apr 6, 2004 Time: 11:18:29 AM To change this template use File | Settings | File Templates.

Field Summary

static String	ANNOTATION_MULTICLASS
static String	ANNOTATION_MUTATION
static String	ANNOTATION_PROTEIN
static int	INT_ANNOTATION_MULTICLASS
static int	INT_ANNOTATION_MUTATION
static int	INT_ANNOTATION_PROTEIN

Fields inherited from interface textractor.datamodel.annotation.AnnotationSource

FIRST_TERM, SECOND_TERM

Constructor Summary

SingleTermAnnotation()
Creates a new Single Term Annotation.

SingleTermAnnotation(int annotationBatch, int annotationNumber)

Method Summary

Object2IntMap<String>	getAnnotationMap()
int	getCenterPosition() Calculates and returns the center of the terms described in this annotation.
String	getStringType() Returns the type of this annotation as a String.
AnnotatedTerm	getTerm()
AnnotatedTerm	getTerm(int index) Returns one of the terms that are the focus of this annotation.
int	getTermNumber() Returns the number of terms in this annotation.

Methods inherited from class textractor.datamodel.annotation.TextFragmentAnnotation

createAnnotatedTerm, createIndexedTerms, getAnnotation, getAnnotationBatchNumber, getAnnotationNumber, getBooleanAnnotation, getBooleanAnnotation, getCurrentText, getIndexedTerms, getIsSingleTerm, getSentence, getSpaceDelimitedIndexFormatTerms, isAnnotationImported, isSet, isUseSentenceText, setAnnotation, setAnnotation, setAnnotationImported, setCurrentText, setIndexedTerms, setIsSingleTerm, setSentence, setUseSentenceText

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ANNOTATION_MUTATION

public static final String ANNOTATION_MUTATION

See Also:

Constant Field Values

ANNOTATION_PROTEIN

public static final String ANNOTATION_PROTEIN

See Also:

Constant Field Values

ANNOTATION_MULTICLASS

public static final String ANNOTATION_MULTICLASS

See Also:

Constant Field Values

INT_ANNOTATION_MUTATION

public static final int INT_ANNOTATION_MUTATION

See Also:

Constant Field Values

INT_ANNOTATION_PROTEIN

public static final int INT_ANNOTATION_PROTEIN

See Also:

Constant Field Values

INT_ANNOTATION_MULTICLASS

public static final int INT_ANNOTATION_MULTICLASS

See Also:

Constant Field Values

Constructor Detail

SingleTermAnnotation

public SingleTermAnnotation()

Creates a new Single Term Annotation.

SingleTermAnnotation

public SingleTermAnnotation(int annotationBatch,
                            int annotationNumber)

Method Detail

getTerm

public AnnotatedTerm getTerm()

getStringType

public String getStringType()

Description copied from class: TextFragmentAnnotation

Returns the type of this annotation as a String. returns protein for SingleTermAnnotations when the term is annotated as a protein, mutation when the term is annotated as a mutation.

Specified by:

getStringType in class TextFragmentAnnotation

Returns:

The type of this annotation

getCenterPosition

public int getCenterPosition()

Calculates and returns the center of the terms described in this annotation. For single term annotations, the center is the position of the term itself.

Returns:

The position of the term in the text of this annotation.

getTerm

public AnnotatedTerm getTerm(int index)

Description copied from interface: AnnotationSource

Returns one of the terms that are the focus of this annotation.

Parameters:

index - Index of the term in this annotation.

Returns:

The term at this index in this annotation.

getTermNumber

public int getTermNumber()

Description copied from interface: AnnotationSource

Returns the number of terms in this annotation.

Returns:

the number of terms in this annotation.

getAnnotationMap

public Object2IntMap<String> getAnnotationMap()

Specified by:

getAnnotationMap in class TextFragmentAnnotation