SigPath

Package org.sigpath.task.xml

XML Import/Export Tasks.

See:
          Description

Class Summary
TConfirmComponent Confirms Component Data.
TConfirmEnzymatic Confirms Enzymatic Reaction Data.
TConfirmReactions Confirms Reaction Data.
TCoreTasks Core Validation, Confirmation and Export Utility Functions.
TCoreValidate Common SigPath Validation Utilities.
TExportBase Base Class for Exporting SigPath Entities to XML.
TExportModels Exports Models to XML.
TExportPendingReviews TODO: Now replaced by TExportPendingList, should be removed once TExportPendingList has been running "bug-free" for a while.
TExportStandaloneModel Exports a model to XML (standalone mode).
TImportBase Base Class for Importing SigPath Entities to XML
TSaveComponent Saves Component Submission to Database.
TSaveConcMeasurements Saves ConcentrationMeasurements Submission to Database.
TSaveEnzymatic Saves Enzymatic Reaction Submission to Database.
TSaveKineticInteractions provides generic methods for importing kineticInteractions.
TSaveKinetics  
TSaveModels Saves Model Submission to Database.
TSaveNamedChemicalInteractions Saves Named Chemical Interaction Submission to Database.
TSaveNamedChemicals Saves Named Chemical Submission to Database.
TSavePathways Saves Pathway Submission to Database.
TSavePendingReviews Saves PendingReviews to database.
TSaveProteins Saves Protein Submission to Database.
TSaveReactions Saves Reaction Submission to Database.
TSaveSmallMolecules Saves SmallMolecule Submission to Database.
TUpdateReactions //todo the kinetic and kinetic bindings are not updated Updates Reaction Submission to Database.
TValidateComponent Validates Component Data.
TValidateConcMeasurements Validates ConcentrationMeasurement Data.
TValidateEnzymatic Validates Enzymatic Reaction Data.
TValidateKineticInteractions Check that the Kinetic Interaction is valid.
TValidateKinetics Validates the kinetics.
TValidateModelCompartments  
TValidateModelConcentrations  
TValidateModelExcludedReactions  
TValidateModelReactions  
TValidateModels Validates Model Data.
TValidateNamedChemicalInteractions Validates Named Chemical Interaction Data.
TValidateNamedChemicals Validates NamedChemical Data.
TValidatePathways Validates Model Data.
TValidatePendingReviews Validates Pending Reviews.
TValidateProteins Validates Protein Data.
TValidateReactions Validates Reaction Data.
TValidateSmallMolecules Validates Small Molecule Data.
TValidateSPE Base Class for Validating All SigPathEntities.
 

Package org.sigpath.task.xml Description

XML Import/Export Tasks.


SigPath

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