SigPath

Package org.sigpath.task.model

Class Summary
ExportWriter abstract class for all exports except kinetikit exports
JSimWriter Used to append SBMLEntity instances in a JSim format.
MoleculeComparator Compares two molecules by the spid of their chemical.
MoleculeRefComparator  
SBMLCompartment This class may not be very usefull since equivalency between sigpath Compartment class and SBML Compartment classes is quasi-perfect.
SBMLEntity SBML Entity (equiv.
SBMLEntityComparator  
SBMLL1V1Writer To be used of exports to sbml level1 version1 (species attributes referred as "specie")
SBMLL1V2Writer To be used for exports to sbml level1 version2 (species attributes referred as "species")
SBMLL2Writer To be used for sbml level2 version1 exports.
SBMLReaction Equivalent to an reaction in sbml langage.
SBMLReactionComparator  
SBMLSpecies  
SBMLWriter SBMLWriter instances enable one to append to an xml file the components of a model constituted by SBMLEntity instances, according to the sbml schema.
SigPathEntityComparator Compares two SigPath entities based on the comparison of their spids.
TempReactionComparator  
TExportModel  
TExportModelKK Exports a Model in the Kinetikit format.
TExportModelReactionsFromSpids Should be used on Reactions and Enzymatic Reactions only.
TGetMoleculesFromReactions  
TSBMLModelExport This class enables creating an SBML model, constituted currently only by instances of SBMLcompartments, SBMLspecies and SBMLreactions (from elementary and enzymatic reactions).
 


SigPath

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