SigPath

Package org.sigpath.bioimport

Imports Background Biological Data into the SigPath System.

See:
          Description

Class Summary
DisplaySPSubmission Given an XML SigPath Submission object, this class outputs a simple text formatted summary.
FullTextIndexer Performs the full text indexing sigpath entities.
FullTextSearchIndexer Performs the full text indexing sigpath entities.
GenewaysSBMLImport Enables one to read an SBML file with annotations following to the simplified (without any references to mathml) SBML schema and the geneways schema for annotations (cf.
IdRefPostProcessingAction Idref post-processing action.
ProteinImport Provides a command line interface for importing proteins to the database from an xml file.
Search Command Line Utility to test Search Functionality
SmallMoleculeImport SmallMoleculeImport parses a file, creates SmallMolecule objects and inserts them into a database.
SmallMoleculeImporter SmallMoleculeImporter calls the SmallMoleculeImport class to parse a file.
XMLExport Performs XML Export of Sigpath Data.
XMLImport Master Class for SigPath XML Import.
 

Package org.sigpath.bioimport Description

Imports Background Biological Data into the SigPath System.

This package is responsible for importing external biological data into the SigPath System. Currently, the package imports the following data:


SigPath

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