LocusMiner/Optimization API locusminer-39 (20090430155559)

edu.cornell.med.icb.locusminer
Class Locus

java.lang.Object
  extended by edu.cornell.med.icb.locusminer.Locus

public class Locus
extends Object

Represents a genetic locus. A region of a chromosome that may contain many genes.

Author:
Fabien Campagne Date: Apr 14, 2007 Time: 2:26:21 PM

Constructor Summary
Locus()
           
Locus(String identifier)
           
 
Method Summary
 void add(Transcript transcript)
           
 void addTranscript(String transcriptIdentifier)
           
 String getIdentifier()
           
 Transcript getTranscript(String transcriptId1)
           
 Transcript getTranscriptAtIndex(Integer transcriptIndex)
           
 int getTranscriptIndex(Transcript transcript)
           
 int numTranscripts()
           
 void tighten()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Locus

public Locus()

Locus

public Locus(String identifier)
Method Detail

getIdentifier

public String getIdentifier()

addTranscript

public void addTranscript(String transcriptIdentifier)

add

public void add(Transcript transcript)

getTranscript

public Transcript getTranscript(String transcriptId1)

numTranscripts

public int numTranscripts()

tighten

public void tighten()

getTranscriptAtIndex

public Transcript getTranscriptAtIndex(Integer transcriptIndex)

getTranscriptIndex

public int getTranscriptIndex(Transcript transcript)

LocusMiner/Optimization API locusminer-39 (20090430155559)

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