LocusMiner/Optimization API locusminer-39 (20090430155559)

edu.cornell.med.icb.locusminer
Class Genome

java.lang.Object
  extended by edu.cornell.med.icb.locusminer.Genome

public class Genome
extends Object

Represents a set of loci.

Author:
Fabien Campagne Date: Apr 14, 2007 Time: 2:27:40 PM

Constructor Summary
Genome()
           
 
Method Summary
 void add(Locus locus)
           
 void add(Transcript transcript)
           
 ObjectList<Locus> getLoci()
           
 Locus getLocus(String identifier)
           
 Locus getLocusAtIndex(int locusIndex)
           
 Transcript getTranscript(String transcriptId)
           
 int numLoci()
           
 int numTranscripts()
           
 void tighten()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Genome

public Genome()
Method Detail

add

public void add(Locus locus)

getLocus

public Locus getLocus(String identifier)

add

public void add(Transcript transcript)

getTranscript

public Transcript getTranscript(String transcriptId)

numLoci

public int numLoci()

numTranscripts

public int numTranscripts()

getLoci

public ObjectList<Locus> getLoci()

tighten

public void tighten()

getLocusAtIndex

public Locus getLocusAtIndex(int locusIndex)

LocusMiner/Optimization API locusminer-39 (20090430155559)

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