edu.mssm.crover

Packages
edu.mssm.crover.bturns Provides code useful for beta turn analysis in proteins.
edu.mssm.crover.cli Provides for the parsing of parameters for Command Line Interface tools.
edu.mssm.crover.corba.servers.sequences  
edu.mssm.crover.db  
edu.mssm.crover.db.object.schema.ims  
edu.mssm.crover.db.objectstore  
edu.mssm.crover.db.objectstore.util  
edu.mssm.crover.identification Provides identification of proteins from their sequences.
edu.mssm.crover.imports Provides for the import of sequences from files.
edu.mssm.crover.ims  
edu.mssm.crover.ims.permissions  
edu.mssm.crover.ims.permissions.collections  
edu.mssm.crover.ims.submissions  
edu.mssm.crover.ims.submissions.collections  
edu.mssm.crover.ims.tasks Provides a framework for the management of asynchronous tasks.
edu.mssm.crover.ims.tasks.engines Provides task engines.
edu.mssm.crover.ims.tasks.groups Provides groups of tasks.
edu.mssm.crover.ims.tasks.results Provides classes to store the results generated by tasks.
edu.mssm.crover.ims.tasks.rmi Provides RMI access to the task manager.
edu.mssm.crover.ims.tasks.tools Provides tools to schedule tasks and report on their status.
edu.mssm.crover.ims.tasks.workers Provides workers which execute the tasks on the CPUs.
edu.mssm.crover.ims.test  
edu.mssm.crover.ims.users  
edu.mssm.crover.ims.users.collections  
edu.mssm.crover.ims.users.test  
edu.mssm.crover.memtest Provides helper classes to identify memory leaks in java programs.
edu.mssm.crover.odmg  
edu.mssm.crover.odmg.fastobjects  
edu.mssm.crover.odmg.fastobjects.util  
edu.mssm.crover.odmg.objectstore  
edu.mssm.crover.odmg.objectstore.util  
edu.mssm.crover.representation Provides for the representation of biological objects.
edu.mssm.crover.structs Provides code for the analysis of PDB files.
edu.mssm.crover.tables Provides for table data structures, algorithms, readers and writers.
edu.mssm.crover.tables.readers Provides table readers.
edu.mssm.crover.tables.treatments Provides table treatments.
edu.mssm.crover.tables.writers Provides table writers.
edu.mssm.crover.tools Provides API to access bioinformatics tools.
edu.mssm.crover.tools.blast Provides an API to access BLAST from Java.
edu.mssm.crover.tools.blast.parsers Provides parsers for the XML version of the BLAST oupput.
edu.mssm.crover.tools.blast.parsers.xml.parser1  
edu.mssm.crover.tools.blast.parsers.xml.parser2  
edu.mssm.crover.tools.blast.parsers.xml.parser3  
edu.mssm.crover.tools.blast.parsers.xml.v1  
edu.mssm.crover.tools.blast.parsers.xml.v2  
edu.mssm.crover.tools.blast.parsers.xml.v3  
edu.mssm.crover.tools.mapstrength  
edu.mssm.crover.tools.regel  
edu.mssm.crover.tools.tm Provides APIs to access transmembrane prediction tools from Java.
edu.mssm.crover.util Provides various tools and APIs.
edu.mssm.crover.util.msaviz  
edu.mssm.crover.util.properties  
edu.mssm.crover.webapps.ims.constants  
edu.mssm.crover.webapps.ims.control  
edu.mssm.crover.webapps.ims.input  
edu.mssm.crover.webapps.ims.input.prototype  
edu.mssm.crover.webapps.ims.lw  
edu.mssm.crover.webapps.ims.lwtest  
edu.mssm.crover.webapps.ims.util  
edu.mssm.crover.webapps.tmprop.datamodel  
edu.mssm.crover.webapps.tmprop.lw  
edu.mssm.crover.webapps.util  

 



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