edu.mssm.crover.util.msaviz
Interface AlignmentFormatter

All Known Implementing Classes:
HTMLAlignmentFormatter, SVGAlignmentFormatter, TextAlignmentFormatter

public interface AlignmentFormatter


Method Summary
 void begin(java.io.Writer writer)
           
 void end()
           
 void writeLinkedResidue(char residue, java.lang.String url)
           
 void writeNewLine()
           
 void writeResidue(char residue)
           
 void writeSpace()
           
 void writeText(java.lang.String text)
           
 

Method Detail

begin

void begin(java.io.Writer writer)
           throws java.io.IOException
Throws:
java.io.IOException

writeResidue

void writeResidue(char residue)
                  throws java.io.IOException
Throws:
java.io.IOException

writeLinkedResidue

void writeLinkedResidue(char residue,
                        java.lang.String url)
                        throws java.io.IOException
Throws:
java.io.IOException

writeText

void writeText(java.lang.String text)
               throws java.io.IOException
Throws:
java.io.IOException

writeSpace

void writeSpace()
                throws java.io.IOException
Throws:
java.io.IOException

writeNewLine

void writeNewLine()
                  throws java.io.IOException
Throws:
java.io.IOException

end

void end()
         throws java.io.IOException
Throws:
java.io.IOException


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