edu.mssm.crover.util
Interface GeneProductPredictor

All Known Implementing Classes:
GenScan

public interface GeneProductPredictor


Field Summary
static int ARABIDOPSIS
          Organism code for Arabidopsis.
static int MAIZE
          Organism code for maize.
static int VERTEBRATES
          Organism code for vertebrates.
 
Method Summary
 BiologicalSequence[] predict(BiologicalSequence seq, int organism_code)
          Predicts the product of the genes encoded by the sequence passed as argument.
 

Field Detail

VERTEBRATES

static final int VERTEBRATES
Organism code for vertebrates.

See Also:
Constant Field Values

MAIZE

static final int MAIZE
Organism code for maize.

See Also:
Constant Field Values

ARABIDOPSIS

static final int ARABIDOPSIS
Organism code for Arabidopsis.

See Also:
Constant Field Values
Method Detail

predict

BiologicalSequence[] predict(BiologicalSequence seq,
                             int organism_code)
                             throws UnsupportedOrganism
Predicts the product of the genes encoded by the sequence passed as argument. Returns an array of protein sequences.

Throws:
UnsupportedOrganism


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