Package edu.mssm.crover.tools

Provides API to access bioinformatics tools.

See:
          Description

Class Summary
cutal Cuts an alignment to keep specific ranges of alignment positions.
getAAComposition Calculates the aa composition of a set of protein sequences.
sumColumns  
 

Exception Summary
CommandNotInstalled  
RangeNotFoundException This exception is thrown when a residue range cannot be identified in a reference sequence.
WrapperFailed Exception thrown when a wrapper fails in its interation with the wrapped tool.
 

Package edu.mssm.crover.tools Description

Provides API to access bioinformatics tools. Some APIs are just wrapper around external tools (i.e. BLAST), but some tools are part of crover and implemented in Java.

Package Specification

See the sub-packages for a list of available tools.

Related Documentation



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