BDVal API 20110316173314

edu.cornell.med.icb.geo
Interface FormatAdapter

All Known Implementing Classes:
AffySnpChipFormatAdapter, BinaryArray2CountsAdapter, BinaryArray2PositiveAdapter, BinaryArray2TabDelimitedAdapter, BinaryArrayProbesetMinNormalizer, BinaryArraySingularValueDecompositionAdapter, DefaultSignalAdapter, MPSS2BinaryAdapter, QuantileNormalizerPass1Adapter, QuantileNormalizerPass2Adapter, RawSignalAdapter, SAGECountFormatAdapter, Tags2ExternalId, Tags2FastaAdapter

public interface FormatAdapter

Author:
Fabien Campagne Date: Aug 16, 2007 Time: 3:00:38 PM

Method Summary
 void analyzeSampleData(GEOPlatformIndexed platform, SampleDataCallback callback, MutableString sampleIdentifier)
           
 SampleDataCallback getCallback(GEOPlatformIndexed platform)
           
 void postSeries(GEOPlatformIndexed platform, ObjectList<MutableString> sampleIdSelection)
           
 void preSeries(GEOPlatformIndexed platform)
           
 void setOptions(GeoScanOptions options)
           
 

Method Detail

getCallback

SampleDataCallback getCallback(GEOPlatformIndexed platform)

analyzeSampleData

void analyzeSampleData(GEOPlatformIndexed platform,
                       SampleDataCallback callback,
                       MutableString sampleIdentifier)

preSeries

void preSeries(GEOPlatformIndexed platform)

postSeries

void postSeries(GEOPlatformIndexed platform,
                ObjectList<MutableString> sampleIdSelection)

setOptions

void setOptions(GeoScanOptions options)

BDVal API 20110316173314

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