Arcadia

Packages
edu.mssm.crover.cli Provides for the parsing of parameters for Command Line Interface tools.
edu.mssm.crover.domain2d Provides implementations of the algorithms we developed for the drawing of Residue-based diagrams.
edu.mssm.crover.domain2d.rbdg  
edu.mssm.crover.domain2d.rbdg.layout.xml  
edu.mssm.crover.domain2d.rbdg.xml  
edu.mssm.crover.domain2d.rbdg.xml.types  
edu.mssm.crover.identification Provides identification of proteins from their sequences.
edu.mssm.crover.imports Provides for the import of sequences from files.
edu.mssm.crover.mutations.drivers Provides a framework for interfacing with mutation servers.
edu.mssm.crover.mutations.drivers.dimlib  
edu.mssm.crover.representation Provides for the representation of biological objects.
edu.mssm.crover.tools Provides API to access bioinformatics tools.
edu.mssm.crover.tools.blast Provides an API to access BLAST from Java.
edu.mssm.crover.tools.blast.parsers Provides parsers for the XML version of the BLAST oupput.
edu.mssm.crover.tools.blast.parsers.xml.v3  
edu.mssm.crover.tools.tissue.xml  
edu.mssm.crover.util Provides various tools and APIs.
edu.mssm.crover.util.msaviz  
edu.mssm.crover.webapps.dimlib  
edu.mssm.crover.webapps.dimlib.datamodel  
edu.mssm.crover.webapps.dimlib.datamodel.test  
edu.mssm.crover.webapps.dimlib.lw  
edu.mssm.crover.webapps.dimlib.parsers.xml  
edu.mssm.crover.webapps.dimlib.parsers.xml.aln  
edu.mssm.crover.webapps.dimlib.parsers.xml.types  
edu.mssm.crover.webapps.dimlib.util  
edu.mssm.crover.webapps.util  

 



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