Package edu.mssm.crover.util

Provides various tools and APIs.

See:
          Description

Class Summary
AlignmentReader Class to read the sequences in a two-sequence alignment, and then find pairs of residues that are conserved or switched between them.
ChunkIterator Uses MultiplePartFileIterator to split a file into chunks containing a predefined number of sections from the input file.
CodonTable  
Inspect Inspect a class with the reflection API.
MultiplePartFileIterator Divides a multiple XML BlastOutput into several single BlastResults.
ReverseSequence Takes a String or char array of DNA/RNA nucleotides and reverse complements it.
SequenceChunkIterator Uses MultiplePartFileIterator to split a file into chunks containing a predefined number of sections from the input file.
 

Exception Summary
UnsupportedOrganism  
 

Package edu.mssm.crover.util Description

Provides various tools and APIs. See for instance a Java API to access Genscan, PhdHTM, etc.

Package Specification

See the sub-packages for a list of available tools.

Related Documentation



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