All Classes
AbstractAnnotationsToDrawings
AbstractLoopTemplate
AbstractModel
AccessionCode
Activity
ActivityDescriptor
AddAdditionalInfoToMutant
AddRbdgXML
AlgorithmicLoopTemplate
Alignment
AlignmentFormatter
AlignmentModifier
AlignmentQuery
AlignmentReader
AlignmentSelection
AlignmentSubSelection
AlignmentViewer
AlnID
AlnSequence
AlnSequenceDescriptor
AlnSequences
AlnSequencesDescriptor
AlnSubmitter
AlnSubmitterDescriptor
AlnValidator
AnnotatedBioSequence
Annotation
AnnotationParser
Annotations
Annotations
AnnotationsDescriptor
AnnotationsToDrawings
AnnotationSupport
ArcadiaAlignedSequence
ArcadiaAlignment
ArcadiaAlnSubmission
ArcadiaAlnSubmissionDescriptor
BasicResidueGlyphRenderingAttributes
BetaStrandDomain
BetaStrandModel
BezierPath
BiologicalAlignment
BiologicalAnnotation
BiologicalAnnotations
BiologicalDescription
BiologicalOrigin
BiologicalSequence
BlastCommand
BlastContext
BlastHits
BlastHitsDescriptor
BlastOutput
BlastOutput_iterations
BlastOutput_iterationsDescriptor
BlastOutput_iterationsType
BlastOutput_iterationsTypeDescriptor
BlastOutput_param
BlastOutput_paramDescriptor
BlastOutput_paramType
BlastOutput_paramTypeDescriptor
BlastOutputDescriptor
BlastResult
BrushingModel
BrushingModelInterface
BrushingMouseListener
ChangeInPropertyType
ChangeInPropertyTypeDescriptor
check_bernstein
Chimera
ChimeraDescriptor
ChunkIterator
CLI
CodonTable
Color_Annotation
ColorAnnotationsColorScheme
Colors
ColorScheme
ColorSchemeDescriptor
ColorsDescriptor
CommandNotInstalled
CompleteSubmission
ConfirmSNP
ConstrainedPoint
ControlPoints
ControlPoints
ControlPointsDescriptor
ControlPointsDescriptor
CoolPrint
CoolPrintRescale
Cpoint
Cpoint
CpointDescriptor
CpointDescriptor
CreateMutant
CreateSNP
CtermDomain
CustomizedDiagramImpl4_0
DatabaseNotFound
Dblinks
DblinksDescriptor
DBSModel
DefaultHelixModel
Define
DefineDescriptor
Deletion
DeletionDescriptor
Description
Diagram
Diagram
DiagramAnnotationsToDrawingsImpl
DiagramDescriptor
DiagramLayout
DiagramLayout
DiagramLayoutDescriptor
DiagramLayoutDescriptor
DiMLibDriver
DiMLibForm
DiMLibQueryServletSessionManager
DiMLibServletSession
DiMLibServletSessionManager
DimlibSubmission
DimlibSubmissionDescriptor
DiMLibViewerServletSessionManager
Direction
Direction
DirectionDescriptor
DirectionDescriptor
DisulfidBridgeDrawing
DisulfidBridgeTranslator
Disulfide_Annotation
DisulfideBridge
DisulfideBridgeDescriptor
Domain2D
Domain2D_ABuilder
Domain2D_Annotation
Domain_Annotation
DraggingModel
DraggingModelInterface
Drawing
DrawingSurface
DriverInformation
DSLayoutManager
DummySolver
ElectrophysiologicalProperties
ElectrophysiologicalPropertiesDescriptor
Elipses
Elipses
ElipsesDescriptor
EllipsisGlyph
Exclude
ExcludeDescriptor
ExcludeResidueRangeType
ExcludeResidueRangeTypeDescriptor
ExpLevel
ExpLevelDescriptor
ExportAln
ExportXML
ExtantProteinModification
Extended_ColorAnnotation
ExtendedSS_Annotation
ExtendedSwissProtReader
ExternalReferences
ExternalReferencesImpl
ExtractAC
ExtractAcIdentity
ExtractDefLine
ExtremityDomain
ExtremityModel
FastaReader
FastaReaderType
FortranOutputParser
FreeLoop
FreeLoopModel
GenericPosition
GifMap
GlyphLink
GlyphLinkImpl
GPCRDB_ColorScheme
HelicalDomain
HelixLayout
HelixModel
Hit
Hit
Hit_hsps
Hit_hspsDescriptor
Hit_hspsType
Hit_hspsTypeDescriptor
HitDescriptor
HitDescriptor
HitSummary
HitSummaryIterator
HitType
HitTypeDescriptor
Hsp
HspDescriptor
HspType
HspTypeDescriptor
HTMLAlignmentFormatter
HTMLFormatter
Identification
Image
ImageDescriptor
ImageFormatType
ImageFormatTypeDescriptor
ImageMap
ImageMapDescriptor
ImportAln
ImportFHExcel
ImportWTP
ImportXML
Include
IncludeDescriptor
IncludeResidueRangeType
IncludeResidueRangeTypeDescriptor
Inhibitor
InhibitorDescriptor
InhibitorEffectType
InhibitorEffectTypeDescriptor
Insertion
InsertionDescriptor
Inspect
InvalidDomain
InvalidFieldLimits
InvalidLocationException
InvalidMutationException
InvalidRange
InvalidResidueException
InvalidSNPException
InvalidState
InvalidSubmissionException
InvalidTMException
IonEffect
IonEffectDescriptor
Iteration
Iteration_hits
Iteration_hitsDescriptor
Iteration_hitsType
Iteration_hitsTypeDescriptor
Iteration_stat
Iteration_statDescriptor
Iteration_statType
Iteration_statTypeDescriptor
IterationDescriptor
IterationType
IterationTypeDescriptor
JDOFactory
JPanelImage
LayoutController
LayoutParser
LegalDisclaimer
Line_Annotation
Line_drawing
Line_drawingDescriptor
LineDrawing
LineDrawingTranslator
Link
LinkDescriptor
Links
LinksDescriptor
LiteratureReference
LiteratureReferenceImpl
LiteratureReferences
LiteratureReferencesImpl
LitRefSorter
Localization
LocalizationDescriptor
LoopTemplate
LoopTemplateSelector
LoopTemplateSelectorImpl
MailAlert
MakeNewProteinEntry
MegablastHSIterator
MichaelisConstant
MichaelisConstantDescriptor
MonotonousColorScheme
MPSorter
MultiplePartFileIterator
MultiPointLoopTemplate
Mutant
Mutant
MutantAdditionalInfo
MutantDescriptor
MutantID
MutantProtein
MutantProteinTest
MutantQuery
MutantQueryExtended
MutantQueryManager
Mutants
MutantsDescriptor
Mutation
Mutation_Annotation
MutationDriver
MutationDriverCache
MutationDriverFactory
MutationDriverFactoryImpl
MutationManager
MutationParser
Mutations
MutationsDescriptor
MutationsItem
MutationsItemDescriptor
MutationSorter
MutationType
MutationValidator
NBezierPath
NewAlnSubmission
NewProteinViewer
NewSubmission
NoSuchResidue
Options
OptionsDescriptor
Origin
OriginFactory
Other_protein
Other_proteinDescriptor
Output
OutputDescriptor
Page
PageDescriptor
Paper
PaperDescriptor
PaperViewer
Parameters
ParametersDescriptor
ParametersType
ParametersTypeDescriptor
Parser
PDBReader
PDBReaderOrigin
PDBReaderType
PIRReader
PIRReaderType
PointMutation
PointMutationDescriptor
PrintablePanel
PropertyEffectType
PropertyEffectTypeDescriptor
Protein
Protein
ProteinDescriptor
ProteinDescriptor
ProteinID
ProteinSegmentDomain
ProteinSegmentLinkImpl
ProteinSegmentModel
ProteinSelection
ProteinSelectionExtended
ProtocolError
QuaternaryStructure
QuaternaryStructureDescriptor
QuerySequence
QuerySequenceDescriptor
RAdd
RandomAccessAlignment
RbdeDiagram
RbdeDiagramDescriptor
rbdg
RbdgXMLGenerator
RConstAdaptor
RConstant
ReaderType
References
ReferencesDescriptor
ReflexPoint
Regulation
RegulationDescriptor
REqual
Residue
ResidueAnnotation
ResidueBackground
ResidueBackgroundDescriptor
ResidueColor
ResidueColorDescriptor
ResidueColorScheme
ResidueDescriptor
ResidueGlyph
ResidueGlyphFactory
ResidueGlyphFactoryImpl
ResidueGlyphRenderingAttributes
ResidueModel
ResidueModelFactory
ResidueNumberingDrawings
ResidueShape
ResidueShapeDescriptor
ReverseSequence
RExpression
RGE
RInvalidChange
RootObject
Rotator
RSub
RVariable
SecondaryStructure
SecondaryStructure_Annotation
SecondaryStructureDescriptor
Segment
SegmentDescriptor
SelectableObject
SelectedModel
SelectedModelInterface
SelectionToVisualization
Sequence
SequenceChunkIterator
SequenceOrigin_Annotation
SequenceReader
SequenceReaderFactory
SequenceReaderFactoryImpl
SequenceTest
SeqUtils
Setup
SharedResidueModelFactory
SNP
Snp
SnpDescriptor
SnpID
SNPQuery
Snps
SnpsDescriptor
SNPSelection
SNPSorter
SNPValidator
SNPViewer
Solver
SolverInternalError
SourceNotAvailable
Spacer
Spacer
Spacer_Annotation
SpacerDescriptor
SpacerDescriptor
Start
Statistics
StatisticsDescriptor
StatisticsType
StatisticsTypeDescriptor
Submitter
SubmitterDescriptor
SubmitterInfo
SubstrateBinding
SubstrateBindingDescriptor
Subunit
Subunit
SubunitDescriptor
SubunitDescriptor
SubunitRef
SubunitRefDescriptor
SVGAlignmentFormatter
SwissProtReader
SwissProtReaderOrigin
SwissProtReaderType
SyntaxErrorException
TabularBlastOutput
TestFormatters
TextAlignmentFormatter
TissueInfo
TissueInfoDescriptor
TM_Annotation
Tm_domain
Tm_domainDescriptor
Tm_segment
Tm_segmentDescriptor
TmBundle
TmBundle
TmBundleDescriptor
TmBundleDescriptor
TmDomain_Annotation
TMValidator
Tokey
TokeyDescriptor
TwoEndsDomain
TwoEndsDraggableDomain
TwoResidueLineDrawing
UIStates
UniqueResidueModelFactory
UnregisteredReaderTypeException
UnsupportedFileFormatException
UnsupportedFormat
UnsupportedOrganism
UnsupportedOrigin
UnsupportedResidueType
UploadAlnFile
UploadXMLFile
Url
URL_Annotation
UrlDescriptor
ValidateSubmission
Viewer
VMax
VMaxDescriptor
WildType_protein
WildType_proteinDescriptor
WildTypeProtein
WizardSubmission
WrapperFailed
WrongArgumentTypeException
WrongFileFormatException
WTPQueryManager
WTPSorter
XMLBlastHSIterator
XMLSubmission
XMLValidator
XMLVersionNotSupportedException