Package goby :: Module Alignments
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Module Alignments

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Contains classes that can parse binary alignment data stored in the Goby "compact" format.

Classes [hide private]
  AlignmentReader
Reads alignments written in the Goby "compact" format.
  TooManyHitsReader
Reads "Too Many Hits information from alignments written in the Goby "compact" format
  AlignmentCollectionReader
Iterator for alignment collections within the alignment entries.
Functions [hide private]
 
get_basename(filename)
Return the basename corresponding to the input alignment filename.
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Variables [hide private]
  __package__ = 'goby'
Function Details [hide private]

get_basename(filename)

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Return the basename corresponding to the input alignment filename. Note that if the filename does have the extension known to be a compact alignment the returned value is the original filename.